Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015927810.1_cds_XP_016475522.1_67444
CDS Infomation

[gene=LOC107797173] [db_xref=GeneID:107797173] [protein=probable polygalacturonase] [protein_id=XP_016475522.1] [location=complement(join(96505..97030,97297..97450,98070..98318,98868..98988,100489..100902))] [gbkey=CDS]
Sequence

ATGGCAGATTCTTTCAGATTCCAACACCGTAAACTTGAATACAAGCGTTTGGTTCCATCA
TTTCTGTCGTCTCACCGTACTCTTCTTACTCTTCTTTGGACCATTGGATTTATTCTTATG
GTCGCTTGGCAAAGGACTGCTGTGGATCGCCTTCTGATGTATCGAGGTTGGGACCCACCT
CCTAGGCCCATCCCTAAGCTACGGCCTCTAGTTTTAAATCTCTCCGATTTCGGAGCTGTT
GGCGATGGCGTCACTTTAAATACAAAGGCATTTGAGAGGGCAATTTCGGAAATTCGAAAG
CGAGGTGGTGGTCAGCTCAACGTTGAGCCTGGTTATTGGCTCACGGCGCCGTTTAATCTC
ACTAGCCACATGACGCTCTTCTTAGCTGAAAATGCCGTTATACTTGGAATTGATGACGAG
AGCTATTGGCCACTACTGCCTCCTTTGCCATCATATGGTTATGGAAGAGAACGTCGTGGG
CCGCGTTATGGAAGTTTAATCCATGGGCAAAATCTTAAGGATGTCGTCATAACAGGCCAT
AATGGTACCATTGACGGGCAAGGCCGATCATGGTGGGAGAAATACCGCAAAAAGCTTTTG
AATCACACAAGGGGCCCACTTCTTCAACTTATGTGGTCGAAAGACATTCACATTTCTGAT
GTTACATTCCGTGATTCTCCGTTTTGGACTCTCCACCCTTATGACTGCCAAAATGTTATT
ATCAGAAATGTAACTATTTTGGCTCCACTATCTGATGCCCCAAACACTGATGGAATAGAC
CCTGATTCGTGCGAGAATATGGTGATAGAGGATTGTTATATAAGTGTGGGGGATGATGGA
GTTGCAATCAAGAGTGGCTGGGATCAGTATGGAATTGCATATTCCCGGCCTTCTTCCAAC
ATCACTATCCGTAACCTCATAGTGCGCTCAATGATTAGTGCAGGAGTATCAATTGGAAGT
GAAATGTCTGGTGGAGTGTCAAATATACTAGTGGAGAATCTCCTTGTATGGAACTCAAAA
AGAGGTATAAGAATTAAAACTAGCCCTGGTAGGGGTGGTCATATTCGACATGTAAGCTAC
CGCAACCTGACACTAGAGAACGTTCGTGTGGGCATTGTAATTAAGACTGATTACAATGAA
CATCCTGATGAAGGTTATGATCCAAAAGCCCTTCCAGTTATTGAGGATATAAGCTTTACT
GGTATTCGTGGACAGGGAGTTCGAATACCAGCACGTATTTATGGAAGCCCTGAGATTCCT
GTTCAGAATGTTACTTTTCAGGACATGTCCGTAGGAATAACATACAAGAAGAAGCATATC
TTCCAATGTTCTTTTGTTCAAGGACGTGTTATTGGAAGAATCTTCCCTGCCCCATGTGAG
AATCTTGATTTGTATGATGATGGAGGAAAACTACTTAGGCGAGCAACAACACAGAATACG
AAGGACTTGGATTATGATGGTTGA

Peptide Sequence

PEP ID

XP_016475522.1
PEP Infomation

PREDICTED: probable polygalacturonase [Nicotiana tabacum]
Sequence

MADSFRFQHRKLEYKRLVPSFLSSHRTLLTLLWTIGFILMVAWQRTAVDRLLMYRGWDPP
PRPIPKLRPLVLNLSDFGAVGDGVTLNTKAFERAISEIRKRGGGQLNVEPGYWLTAPFNL
TSHMTLFLAENAVILGIDDESYWPLLPPLPSYGYGRERRGPRYGSLIHGQNLKDVVITGH
NGTIDGQGRSWWEKYRKKLLNHTRGPLLQLMWSKDIHISDVTFRDSPFWTLHPYDCQNVI
IRNVTILAPLSDAPNTDGIDPDSCENMVIEDCYISVGDDGVAIKSGWDQYGIAYSRPSSN
ITIRNLIVRSMISAGVSIGSEMSGGVSNILVENLLVWNSKRGIRIKTSPGRGGHIRHVSY
RNLTLENVRVGIVIKTDYNEHPDEGYDPKALPVIEDISFTGIRGQGVRIPARIYGSPEIP
VQNVTFQDMSVGITYKKKHIFQCSFVQGRVIGRIFPAPCENLDLYDDGGKLLRRATTQNT
KDLDYDG

Transcript Sequence

Gene sequence data has not been registered.